PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G250000.1
Common NameB456_006G250000, LOC105800615
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 133aa    MW: 14678.1 Da    PI: 9.2838
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G250000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-191668156
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        ++y+GVr ++ +g + AeIrdp++  + +r++lg+f taeeAa+a+++a+ +++ge
  Gorai.006G250000.1 16 TRYRGVRSRP-WGTFGAEIRDPNQ--QGARVWLGTFNTAEEAARAYDRAAYSMRGE 68
                        68*****999.**********944..44**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-131668IPR001471AP2/ERF domain
CDDcd000185.23E-171676No hitNo description
Gene3DG3DSA:3.30.730.103.0E-311777IPR001471AP2/ERF domain
SMARTSM003802.6E-311781IPR001471AP2/ERF domain
PROSITE profilePS5103223.1431775IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-221777IPR016177DNA-binding domain
PRINTSPR003671.2E-101829IPR001471AP2/ERF domain
PRINTSPR003671.2E-104157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MEGNYKGKEG SGGGTTRYRG VRSRPWGTFG AEIRDPNQQG ARVWLGTFNT AEEAARAYDR  60
AAYSMRGEFA ILNFPDEYPM GANAYRRSSS TGSSSSSSSA RERGKQVFEI EYVDDNLLEE  120
LLGIDEKKKK KT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-261875360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
3gcc_A1e-261875663ATERF1
2gcc_A1e-261875663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012487286.19e-93PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC52e-39ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0D2S9521e-92A0A0D2S952_G
STRINGGLYMA20G34560.16e-42(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.14e-28ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]